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GWAS Report for Ovary cold response 1

Experimental Details

Number of germplasm analyzed	124
Number of loci tested	7736
Platform name	genotype-by-sequencing

Publication for This Experiment

Cold stress tolerance of soybeans during flowering: QTL mapping and efficient selection strategies under controlled conditions
(Jahne et al. 2019)

Plant Breed. 2019;138:708720
10.1111/pbr.12734

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0002310

Comments

Data was analyzed using Tassel2.0

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Ovary cold response 1-g1	Control _4	2.86	Gm04	C1
No SNP names supplied, just positions
Ovary cold response 1-g2	Control_7	2.83	Gm07	M
No SNP names supplied, just positions
Ovary cold response 1-g3	Control_13	4.7	Gm13	F
No SNP names supplied, just positions
Ovary cold response 1-g4	Stress_7	5.18	Gm07	M
No SNP names supplied, just positions
Ovary cold response 1-g5	Stress_13	7.87	Gm13	F
No SNP names supplied, just positions
Ovary cold response 1-g6	Ratio_7	2.91	Gm07	M
No SNP names supplied, just positions
Ovary cold response 1-g7	Ratio_11	4.93	Gm11	B1
No SNP names supplied, just positions

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